Zucchelli, Silvia
Zucchelli, Silvia
Scuola Internazionale Superiore di Studi Avanzati
A promoter-level mammalian expression atlas
2014-01-01 Forrest, Arr; Kawaji, H; Rehli, M; Baillie, Jk; de Hoon, Mjl; Haberle, V; Lassmann, T; Kulakovskiy, Iv; Lizio, M; Itoh, M; Andersson, R; Mungall, Cj; Meehan, Tf; Schmeier, S; Bertin, N; Jørgensen, M; Dimont, E; Arner, E; Schmidl, C; Schaefer, U; Medvedeva, Ya; Plessy, C; Vitezic, M; Severin, J; Semple, Ca; Ishizu, Y; Young, Rs; Francescatto, M; Alam, I; Albanese, D; Altschuler, Gm; Arakawa, T; Archer, Jac; Arner, P; Babina, M; Baker, S; Balwierz, Pj; Beckhouse, Ag; Pradhan Bhatt, S; Blake, Ja; Blumenthal, A; Bodega, B; Bonetti, A; Briggs, J; Brombacher, F; Burroughs, Am; Califano, A; Cannistraci, Cv; Carbajo, D; Chen, Yang; Chierici, M; Ciani, Y; Clevers, Hc; Dalla, Emiliano; Davis, Ca; Detmar, M; Diehl, Ad; Dohi, T; Drabløs, F; Edge, Asb; Edinger, M; Ekwall, K; Endoh, M; Enomoto, H; Fagiolini, M; Fairbairn, L; Fang, H; Farach Carson, Mc; Faulkner, Gj; Favorov, Av; Fisher, Me; Frith, Mc; Fujita, R; Fukuda, S; Furlanello, C; Furuno, M; Furusawa, J; Geijtenbeek, Tb; Gibson, A; Gingeras, T; Goldowitz, D; Gough, J; Guhl, S; Guler, R; Gustincich, Stefano; Ha, Tj; Hamaguchi, M; Hara, M; Harbers, M; Harshbarger, J; Hasegawa, A; Hasegawa, Y; Hashimoto, T; Herlyn, M; Hitchens, Kj; Ho Sui, Sj; Hofmann, Om; Hoof, I; Hori, F; Huminiecki, L; Iida, K; Ikawa, T; Jankovic, Br; Jia, H; Joshi, A; Jurman, G; Kaczkowski, B; Kai, C; Kaida, K; Kaiho, A; Kajiyama, K; Kanamori Katayama, M; Kasianov, As; Kasukawa, T; Katayama, S; Kato, S; Kawaguchi, S; Kawamoto, H; Kawamura, Yi; Kawashima, T; Kempfle, Js; Kenna, Tj; Kere, J; Khachigian, Lm; Kitamura, T; Klinken, Sp; Knox, Aj; Kojima, M; Kojima, S; Kondo, N; Koseki, H; Koyasu, S; Krampitz, S; Kubosaki, A; Kwon, At; Laros, Jfj; Lee, W; Lennartsson, A; Li, K; Lilje, B; Lipovich, L; Mackay sim, A; Manabe, R; Mar, Jc; Marchand, B; Mathelier, A; Mejhert, N; Meynert, A; Mizuno, Y; de Lima Morais, Da; Morikawa, H; Morimoto, M; Moro, K; Motakis, E; Motohashi, H; Mummery, Cl; Murata, M; Nagao Sato, S; Nakachi, Y; Nakahara, F; Nakamura, T; Nakamura, Y; Nakazato, K; van Nimwegen, E; Ninomiya, N; Nishiyori, H; Noma, S; Nozaki, T; Ogishima, S; Ohkura, N; Ohmiya, H; Ohno, H; Ohshima, M; Okada Hatakeyama, M; Okazaki, Y; Orlando, V; Ovchinnikov, Da; Pain, A; Passier, R; Patrikakis, M; Persson, H; Piazza, Silvano; Prendergast, Jgd; Rackham, Ojl; Ramilowski, Ja; Rashid, M; Ravasi, T; Rizzu, P; Roncador, M; Roy, Sutapa; Rye, Mb; Saijyo, E; Sajantila, A; Saka, A; Sakaguchi, S; Sakai, M; Sato, H; Satoh, H; Savvi, S; Saxena, A; Schneider, C; Schultes, Ea; Schulze Tanzil, Gg; Schwegmann, A; Sengstag, T; Sheng, G; Shimoji, H; Shimoni, Y; Shin, Jw; Simon, C; Sugiyama, D; Sugiyama, T; Suzuki, M; Suzuki, N; Swoboda, Rk; 't Hoen, Pac; Tagami, M; Takahashi, N; Takai, J; Tanaka, H; Tatsukawa, H; Tatum, Z; Thompson, M; Toyoda, H; Toyoda, T; Valen, E; van de Wetering, M; van den Berg, Lm; Verardo, R; Vijayan, D; Vorontsov, Ie; Wasserman, Ww; Watanabe, S; Wells, Ca; Winteringham, Ln; Wolvetang, E; Wood, Ej; Yamaguchi, Y; Yamamoto, M; Yoneda, M; Yonekura, Y; Yoshida, Shin'Ichirou; Zabierowski, Se; Zhang, Pg; Zhao, X; Zucchelli, Silvia; Summers, Km; Suzuki, H; Daub, Co; Kawai, J; Heutink, P; Hide, W; Freeman, Tc; Lenhard, B; Bajic, Vb; Taylor, Ms; Makeev, Vj; Sandelin, A; Hume, Da; Carninci, P; Hayashizaki, Y.
Aggresome-forming TTRAP mediates pro-apoptotic properties of Parkinson's disease-associated DJ-1 missense mutations
2009-01-01 Zucchelli, S; Vilotti, Sandra; Calligaris, R; Lavina, Zs; Biagioli, M; Foti, R; DE MASO, L; Pinto, M; Gorza, M; Speretta, E; Casseler, C; Tell, G; DEL SAL, G; Gustincich, Stefano
Bestrophin-2 is a candidate calcium-activated chloride channel involved in olfactory transduction
2006-01-01 Pifferi, Simone; Pascarella, G; Boccaccio, Anna Elisabetta; Mazzatenta, A; Gustincich, Stefano; Menini, Anna; Zucchelli, Silvia
Conformational ensembles of an RNA hairpin using molecular dynamics and sparse NMR data
2020-01-01 Reißer, Sabine; Zucchelli, Silvia; Gustincich, Stefano; Bussi, Giovanni
Domini strutturali di molecole di RNA antisenso che aumentano la traduzione
2018-02-05 Gustincich, S.; Zucchelli, S.; Podbešek, P.; Hazuki Takahashi, J. P.; Sharma, H.; Ohyama, T.; Yamazaki, T.; Carninci, P.
Engineering mammalian cell factories with SINEUP noncoding RNAs to improve translation of secreted proteins
2015-01-01 Patrucco, L.; Chiesa, A.; Soluri, M. F.; Fasolo, Francesca; Takahashi, H.; Carninci, P.; Zucchelli, Silvia; Santoro, C.; Gustincich, Stefano; Sblattero, D.; Cotella, D.
Engineering Translation in Mammalian Cell Factories to Increase Protein Yield: The Unexpected Use of Long Non-Coding SINEUP RNAs
2016-01-01 Zucchelli, Silvia; Patrucco, L.; Persichetti, F.; Gustincich, Stefano; Cotella, D.
Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease
2015-01-01 Carrieri, C; Forrest, Ar; Santoro, C; Persichetti, F; Carninci, P; Zucchelli, S; Gustincich, Stefano
Hemoglobin is present as a canonical α2β2 tetramer in dopaminergic neurons
2013-01-01 Russo, Roberta; Zucchelli, Silvia; Codrich, Marta; Marcuzzi, F; Verde, C; Gustincich, Stefano
Identification of novel proteins binding the AU-rich element of α-prothymosin mRNA through the selection of open reading frames (RIDome)
2015-01-01 Patrucco, L; Peano, C; Chiesa, A; Guida, Filomena; Luisi, I; Boria, I; Mignone, F; De Bellis, G; Zucchelli, Silvia; Gustincich, Stefano; Santoro, C; Sblattero, D; Cotella, D.
Isoforms of the Erythropoietin receptor in dopaminergic neurons of the Substantia Nigra
2016-01-01 Marcuzzi, F.; Zucchelli, Silvia; Bertuzzi, Maria; Santoro, C.; Tell, G.; Carninci, P.; Gustincich, Stefano
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat
2012-01-01 Carrieri, C; Cimatti, L; Biagioli, M; Beugnet, A; Zucchelli, Silvia; Fedele, S; Pesce, E; Ferrer, I; Collavin, L; Santoro, C; Forrest, A. R.; Carninci, P; Biffo, S; Stupka, E; Gustincich, Stefano
Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules
2014-01-01 Grison, Alice; Zucchelli, Silvia; Urzi, Alice; Zamparo, I.; Lazarevic, Dejan; Pascarella, Giovanni; Roncaglia, Paola; Giorgetti, A.; Garcia esparcia, P.; Vlachouli, C.; Simone, Roberto; Persichetti, F.; Forrest, A. R. R.; Hayashizaki, Y.; Carloni, Paolo; Ferrer, I.; Lodovichi, Claudia; Plessy, C.; Carninci, P.; Gustincich, Stefano
Molecola di acido nucleico funzionale e relativo uso
2017-09-20 Gustincich, S.; Zucchelli, S.
Neuronal hemoglobin affects dopaminergic cells' response to stress
2017-01-01 Codrich, Marta; Bertuzzi, Maria; Russo, Roberta; Francescatto, Margherita; Espinoza, Stefano; Zentilin, Lorena; Giacca, Mauro; Cesselli, Daniela; Beltrami, Antonio Paolo; Ascenzi, Paolo; Zucchelli, Silvia; Persichetti, Francesca; Leanza, Giampiero; Gustincich, Stefano
Parkinson's disease DJ-1 L166P alters rRNA biogenesis by exclusion of TTRAP from the nucleolus and sequestration into cytoplasmic aggregates via TRAF6
2012-01-01 Vilotti, Sandra; Codrich, Marta; Dal Ferro, M; Pinto, M; Ferrer, I; Collavin, L; Gustincich, Stefano; Zucchelli, Silvia
Promoter architecture of mouse olfactory receptor genes
2012-01-01 Plessy, C; Pascarella, G; Bertin, N; Akalin, A; Carrieri, C; Vassalli, A; Lazarevic, D; Severin, J; Vlachouli, Christina; Simone, R; Faulkner, Gj; Kawai, J; Daub, Co; Zucchelli, Silvia; Hayashizaki, Y; Mombaerts, P; Lenhard, B; Gustincich, Stefano; Carninci, P.
SINEUP non-coding RNAs rescue defective frataxin expression and activity in a cellular model of Friedreich's Ataxia
2019-01-01 Bon, C.; Luffarelli, R.; Russo, R.; Fortuni, S.; Pierattini, B.; Santulli, C.; Fimiani, C.; Persichetti, F.; Cotella, D.; Mallamaci, A.; Santoro, C.; Carninci, P.; Espinoza, S.; Testi, R.; Zucchelli, S.; Condo, I.; Gustincich, S.
SINEUPs are modular antisense long non-coding RNAs that increase synthesis of target proteins in cells
2015-01-01 Zucchelli, Silvia; Fasolo, Francesca; Russo, Roberta; Cimatti, Laura; Patrucco, L.; Takahashi, H.; Jones, M. H.; Santoro, C.; Sblattero, Daniele; Cotella, D.; Persichetti, F.; Carninci, P.; Gustincich, Stefano
SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation
2015-01-01 Zucchelli, Silvia; Cotella, D.; Takahashi, H.; Carrieri, Claudia; Cimatti, Laura; Fasolo, Francesca; Jones, M. H.; Sblattero, Daniele; Sanges, Remo; Santoro, C.; Persichetti, F.; Carninci, P.; Gustincich, Stefano