Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described in terms of the folding of chromatin sequences composed of alternating blocks of fibers with different thicknesses and flexibilities, and we use it to study the influence of sequence disorder on chromosome behaviors in space and time. By employing extensive computer simulations, we thus demonstrate that chromosomes undergo noticeable conformational changes only on length-scales smaller than 10(5) basepairs and time-scales shorter than a few seconds, and we suggest there might exist effective upper bounds to the detection of chromosome reorganization in eukaryotes. We prove the relevance of our framework by modeling recent experimental FISH data on murine chromosomes. © 2016 Florescu et al.

Large scale chromosome folding Is stable against local changes in chromatin structure / Florescu, A. M.; Therizols, P.; Rosa, A.. - In: PLOS COMPUTATIONAL BIOLOGY. - ISSN 1553-7358. - 12:6(2016), pp. 1-21. [10.1371/journal.pcbi.1004987]

Large scale chromosome folding Is stable against local changes in chromatin structure

Florescu, A. M.;Rosa, A.
2016-01-01

Abstract

Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described in terms of the folding of chromatin sequences composed of alternating blocks of fibers with different thicknesses and flexibilities, and we use it to study the influence of sequence disorder on chromosome behaviors in space and time. By employing extensive computer simulations, we thus demonstrate that chromosomes undergo noticeable conformational changes only on length-scales smaller than 10(5) basepairs and time-scales shorter than a few seconds, and we suggest there might exist effective upper bounds to the detection of chromosome reorganization in eukaryotes. We prove the relevance of our framework by modeling recent experimental FISH data on murine chromosomes. © 2016 Florescu et al.
2016
12
6
1
21
e1004987
10.1371/journal.pcbi.1004987
https://arxiv.org/abs/1511.05712
http://cdsads.u-strasbg.fr/abs/2016PLSCB..12E4987F
Florescu, A. M.; Therizols, P.; Rosa, A.
File in questo prodotto:
File Dimensione Formato  
RosaFlorescu_Plos2016.PDF

accesso aperto

Descrizione: DOAJ Open Access
Tipologia: Versione Editoriale (PDF)
Licenza: Creative commons
Dimensione 2.97 MB
Formato Adobe PDF
2.97 MB Adobe PDF Visualizza/Apri

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.11767/11839
Citazioni
  • ???jsp.display-item.citation.pmc??? 6
  • Scopus 17
  • ???jsp.display-item.citation.isi??? 16
social impact